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Wednesday, May 5, 2010

Force & Resilience

Yesterday, I watched NOVA's premiere on PBS with the title "MT ST HELENS BACK FROM THE DEAD". The show informs us about insights gained from thirty years of examination of Mount St. Helens and its surroundings, after the volcano blew out its top and one entire side in a massive explosion on May 18, 1980.

The footage of the eruption is breath-taking. The destructive forces unleashed in the catastrophic blast are incomprehensible. Pyroclastic flows wiped out life over 230 square miles. But I was most impressed, following in time-lapse life bounce back in this alien, primordial landscape of utter destruction and desolation. After three months life returned.  A tiny whiskered rodent the size of a hamster, the Northern Pocket Gopher Thomomys talpoides, had survived in its burrows, and even in the most devastated pumice zone, nitrogen-fixating lupines began to flourish. On the surface things seem to progress astonishingly well.

By contrast, underground the outlook is different. Though we have learned much about the forces driving the mountain's eruptions, the interviews with geologists on NOVA make clear that we understand little about the rhythms of seismic activity under the volcano, rendering accurate risk assessment and reliable prediction of a major eruption virtually impossible. I remember watching the last period of noticeable volcanic activity five years ago. I witnessed a dome grow inside the crater and lava glow at night. Ever since, the volcano appears ostensibly quiet.

Despite this respite, the show urgently reminds us of the need to keep a close eye on the mountain. The behavior of burrowing animals with a highly developed sense of touch may provide signatures that may help warn us of a major impending seismic event (see related posts). It may be instructive to observe Northern Pocket gophers. I periodically check the U.S. Forest Service's volcanocam, the least because on some days, weather willing, the mountain looks magnificent and I love to watch the seasons change on her:


Addendum
  • Dmitrieva and others (2013) report that sustained ground vibrations between 0.5 and 5 Hz, known as seismic tremor, have been observed to precede explosive volcanic eruptions by 30 s. Rodent whiskers are particularly sensitive in this range (see my post with the title "The Quest for the Infrasound Acoustic Fovea" published Oct. 12, 2009). The gophers in the pumice zone of Mt. St. Helens may have been saved by sensing this early warning. Ira Flatow interviewed a co-author of the study in the broadcast segment entitled "Volcano 'Screams' Before Eruption" on National Public Radio's Science Friday yesterday (07/20/2013).

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Saturday, May 1, 2010

The Beautiful Eimer's Organ

Maikäfer by H. Baluschek
May is the season of the Maikäfer in Germany, and moles become most active. Hence, in this month we celebrate Gustav Heinrich Theodor Eimer's arguably greatest discovery. Even Frau von Welt discussed it, though in fleeting. Theodor Eimer was born in Zürich, Switzerland, on Feb. 22, 1843, and passed away on May 29, 1898, in Tübingen, Southern Germany. His biography remains scant. After an extended search, I gleaned his birthday from the simple plaque on his grave pictured in this tour of Tübingen's Bergfriedhof. Plaque is a misnomer here. It consists of a rectangular steel plate with black lettering painted on gray rust-proofing. The simplicity does not come close to reflect his discovery.

Theodor Eimer aspired a career in comparative zoology and anatomy. He spent his junior faculty years as prosector at Julius-Maximillian's University, Würzburg, Germany, and moved on to hold a chair in zoology at Eberhard-Karl's University, Tübingen, where he led a productive life as an evolutionary biologist, struggling with Darwin's theory until his untimely death at the age of 55. His greatest scientific contribution, however, may have been as an early neuroethologist. Perhaps, it is this contribution that helped Tübingen's university and its three affiliated Max Planck Institutes develop into a hotbed of neuroscience today.

During his tenure in Würzburg, Theodor Eimer became the first to describe the discrete microscopic organ of touch that densely populates the tip of the nose of the European mole Talpia europaea. The organ is named in his honor. In his original publication (Eimer, 1871), he examined in great detail the structure of the nose, the distribution of the touch organs on the nasal skin, and the relationship of their density with the nose's use for palpation. Eimer sought to establish a connection between structure and function.

Eimer's organ fascinated me, ever since I saw one under the microscope in histological preparations Kenneth Catania showed me. Kenny is studying the North American star-nosed mole Condylura cristata. He counted roughly 25,000 Eimer's organs on these moles' nose appendages called rays. The organ consists of a minute skin papilla between a tenth and a fifth of a millimeter in diameter. At the papilla's core, a beautifully geometric constellation of nerve fibers with free endings is embedded with great symmetry in a conspicuous column of epithelial cells. Eimer (1871) saw two to three single nerve fibers, rising strait in the middle of the column and ending in the fifth layer under the stratum corneum that forms the hard top of the epidermis. The fibers extend short protrusions perpendicularly into each epithelial layer they traverse, where the protrusions end in 'buttons'. They are ringed by a circle of roughly 19 evenly-spaced nerve fibers, known as satellite fibers, whose protrusions point inwards. In addition, Eimer (1871) distinguished a separate set of nerve fibers with free nerve endings. By contrast to the fibers in the papilla's core, these travel obliquely toward the surface at the papilla's perimeter. Both sets are illustrated in his Fig. 2 of his 1871 publication, partially reproduced below:


His legend to this figure reads: Longitudinal section through the frontal surface of the mole's snout treated with the Gold-method. T touch cone, N nerve bundle, E epithelium, C corneum, magnification 400/1.

With improved histological techniques, a second touch receptor type, Merkel cell-neurite complexes, was found in the stratum germinativum at the bottom of the epidermis (darkest part in Eimer's figure), and a third, lamellated corpuscles of Vater and Pacini, was discovered in the stratum papillare of the dermis (white in Eimer's figure) underneath the Merkel cells (Halata, 1975).

Today, we still do not understand precisely how these receptors transduce touch into the electrical signals that the nerve fibers transmit to the brain. But we have learned much about the properties of touch, e.g. frequency and force, to which the receptors respond and how their responsiveness changes with prolonged stimulation. The receptors can be functionally distinguished based on these features. The nerve fibers with free nerve endings and the nerve fibers ending on Merkel cells adapt their responses to touch rapidly, whereas the nerve fibers ending in the lamellated corpuscles are considered slowly adapting.

Marasco and others (2006) were able to attribute different functions to Eimer's two sets of free-ending nerve fibers in the star-nosed mole and the coast mole Scapanus orarius. The authors furnish outstanding micrographs of the organ and its innervation, depicting Eimer's free-ending fibers as well as the Merkel cell-neurite complexes and the Vater-Pacini corpuscles. Using a histochemical marker for a protein known to be involved in the processing of pain, they were able to label the nerve fibers at the perimeter of the papilla, suggesting that they are nociceptive. That is, they respond to pain. By contrast, the fibers in papilla's core did not stain for the protein, suggesting that they are mechanoreceptive. These nerve fibers as well as the Merkel cell-neurite complexes are known to respond to local touches with great sensitivity, whereas the Vater-Pacini corpuscles are highly tuned to the frequencies of dispersed vibrations. Eimer's organ, therefore, forms a receptor complex, integrating pain receptors as well as three fundamentally different types of touch receptors which preferentially respond to either skin indentations or vibrations. The follicles of whiskers, also known as vibrissae or sinus hairs, and the push rods in monotremes (Proske and others, 1998) represent the only other known discrete structures in the skin that combine three mechanoreceptor types.

The Eimer's organs on the nose may be the mole's main tool with which the animal can capture a refined picture of its underworld.  Catania and Kaas (1995) have shown that the nose of the star-nosed mole is mapped in multiple topographic representations on an extraordinarily large swath of cerebral cortex that processes touch. Discrete morphological modules of nerve cells that are clearly discernible in histologically stained sections represent each ray in the same order as they surround the nose. This topographic morphological representation of the sensory periphery is similar to that of the facial whiskers by cytoarchitectonic modules called barrels in the rodent cerebral cortex. I touched on whiskers and barrels in my posts dated Oct. 12, 2009, and Dec. 24,  2008.

To date, two complete cortical maps of the nose with its rays have been found in the brain of the star-nosed mole. There may be more. The nose's disproportionate representation in cerebral cortex is suggestive of a fovea for nose touch in the mole's somatic sensory system (Catania, 1995).



Already Professor Eimer recognized the importance of the mole's nose to the behavior of the species. He begins the introduction to his 1871 publication with the statement: "The mole's snout must be the seat of an extraordinarily well developed sense of touch, because it replaces almost entirely the animal's sense of face, constituting its only guide on its paths underground." He estimated that the nose of the European mole was covered with more than 5,000 Eimer's organs which were invested with 105,000 nerve fibers. He took the abundance of sensory innervation to affirm his contention that the nose's touch must represent the moles dominant facial sense. Professor Eimer ends his report with the assertion that his interpretation is entirely consistent with the common knowledge of his time. His last sentence reads: “This enormous richness of innervation easily explains the well-known fact that already a light blow to the snout kills the mole instantly.”

Roughly 130 years after Professor Eimer's discovery, Catania and colleagues accomplished to record striking behavioral evidence in favor of his conclusion, using a high-speed camera that the eminent professor could hardly have imagined  (Catania and Remple, 2004).  Professor Eimer would have been fascinated, watching this footage. Moles with the help of their Eimer's organs may be perfectly poised to detect seismic vibrations.

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Addendum
Impressively shown by the two Reuters news clips below, high-speed video cameras have developed into invaluable tools in the study of animal behavior. Their application range from the examination of bat flight
to feline drinking, providing new insights propelling engineering design (11/12/10).

Tuesday, April 27, 2010

Energy & The Mind

I clearly remember the efforts of U.S. administrations past (BBC post entitled "Bush calls for offshore drilling" dated Jun. 18, 2008) and present (Stephen Power and Ian Talley's post on The Wall Street Journal with the title "Obama to Propose More Oil Drilling in Gulf" dated Mar. 30, 2010), promoting greater offshore oil exploration in the Gulf of Mexico. The bid was justified with the notion that new drilling for oil was necessary to ease the country's dependence on foreign oil. The nation was told that permitting the exploration of new oil fields in carefully selected hitherto-closed areas would pose negligible environmental risk. Despite hurricanes, oil and gas production in the Gulf had an excellent safety record. Environmental protection groups strongly opposed this view.

A week ago, the Deepwater Horizon, a half billion-dollar floating drilling rig the size of a football field, caught fire after a devastating explosion 41 miles Southeast off the coast of Louisiana. Seventeen workers were injured, four critically, and 11 are still missing and presumed dead. The burning platform sank two days after the accident.

According to Russel Gold and Guy Chazan's report with the title "Oil Spill Likely to reach Land in Days" for The Wall Street Journal today, 1,000 barrels of crude oil per day are spilling from the 5000-foot riser, that is the broken drill pipe, that collapsed onto the sea floor. In his report for CNNMoney entitled "Oil still leaking from sunken Gulf rig" yesterday, Steve Hargreaves reports 42,000 gallons are leaking per day. Campbell Robertson and Clifford Krauss concur with this number in their article with the title "Robots Work to Stop Leak of Oil in Gulf" published in yesterday's New York Times. The difference in number confounded me at first. I think metric. But, the standard American oil barrel contains 42 gallons. Hence, for the time being, the well is releasing crude oil into the Gulf at a rate of roughly 40 barrels/hour. As result, a 50 mile-long oil slick of 400 square-miles is advancing steadily toward the Gulf coast. Faster than anyone anticipated, the worst case scenario that the environmentalists had warned about seems to have come true.

The Gulf shore is one of a kind. Let it be spared!

Reuters provides an informative update here:

The true cost of energy is steep!

Addenda
  • According to Robert Lee Hotz and Angel Gonzalez's post with the title "Oil Spill Estimates Raised Fivefold" for The Wall Street Journal this morning, the Coast Guard now estimates the rate of oil released into the Gulf at 5,000 barrels a day. Campbell Robertson and Leslie Kaufman reported the new estimates in their post for The New York Times entitled "Size of Spill in Gulf of Mexico Is Much Larger Than Thought" last night, and the number is all over the news today. I calculated that this amount would fill 23 standard tractor/trailer rigs a day. I shall keep an eye on my favorite beach spots (Schooners and Spinnaker), once the slick reaches the coast (04/29/10).
  • The prospect of a major oil slick landing on the beaches of the Gulf coast reminded me of the graphic images from the Amoco Cadiz disaster off the coast of the Brittany, France, more than 30 years ago.
    On Mar. 16, 1978, the supertanker Amoco Cadiz broke up three miles offshore and released its total cargo, 1.6 million barrels, of mid-heavy crude oil. By comparison, in the greatest oil tanker spill on U.S. shores, the Exxon Valdez released only 257,000 barrels on March 29, 1989. "Marée noire" or black tide deposited a thick layer of a sticky tar-like mousse on the rocky beaches of the Bretagne for 200 miles. Thousands of volunteers arrived from all over Europe to help carry off the sludge in any vessel they could bring. People sacrificed their cooking pots. The French government estimated the spill's cost at 2 billion dollars. The tanker's owner at the time of the accident Amoco eventually paid $120 million in damages. Amoco now belongs to BP. Perhaps of particular interest to business on the Gulf coast, the losses to the oyster and shellfish industry alone were conservatively estimated at $26 million three years after the incident, and the combined socioeconomic cost to tourism and the fishing industry were projected to be roughly $200 million (Grigalunas and others, 1986). Today, the Breton coast is still mending.

    Though much less and lighter oil is spilling into the Gulf, the Amoco Cadiz disaster may serve as a stark reminder of the profound impact a massive oil spill may exert on industry and wildlife of a populated coast.

    This video sums up the Amoco Cadiz incident pretty well. The video is narrated in French. Regardless, the footage chillingly conveys the traumatic impact of the spill (04/29/10):
Amoco Cadiz, trente ans après - Publimetro
Dans la nuit du 16 au 17 mars 1978 le supertanker s'échouait sur les roches de Portsall dans le Finistère nord... La marée noire s'étendra jusqu'à l'archipel de Bréhat dans les Côtes d'Armor et plusieurs mois furent nécessaires pour effacer les traces de la pollution. 30 ans après, une de nos équipes est allé à la rencontre de ceux qui ont intenté et gagné la première action en justice contre un groupe pétrolier.
  • Every day the estimates of the oil released from the well are revised upwards by an incredible factor 5. According to IanTalley, Stephen Power and Guy Chazan's report with the title "Oil Washes Up on Gulf Coast; Spill May Be Five Times Estimated Size" for The Wall Street Journal today, it now seems that 25,000 barrels spill a day. If this number is correct, the fleet of rigs filled every day would swell to 115. Meanwhile the first spilled oil washed on the Louisiana shore in Plaquemines Parish (04/30/10).
  • The Amoco Cadiz broke up close to shore, having a more localized impact than the spill in the Gulf which will affect the coast of at least four states. According to Mathew Bigg's report on Reuters with the title "U.S. fights to protect shore from massive oil spill" today, the damage to the fishing and tourist industry on the Gulf could reach 2.5 and 3.0 billion dollars, respectively. Listen to Plaquemines Parish President Billy Nungesser assess the potential impact of the oil spill on his region in this interview entitled "La. Parish President Braces For Disaster From Oil Spill" with Melissa Block on NPR's All Things Considered today (04/30/10).
  • This Associated Press article with the title "Best-Case Scenario For Gulf Spill Still Looks Bleak" released by National Public Radio today assesses the current outlook on the environmental and economic impact of the oil spill in the Gulf. 6,800 square miles of federal fishing areas between the mouth of the Mississippi and Pensacola, Florida, have been closed. According to an interview with Wall Street Journal's Jeffrey Ball by Tom Ashbrook on today's broadcast of NPR's On Point with the title "Oil Danger and the Gulf Coast", the well is still releasing oil unabated and the slick is now estimated to cover 1,000 square miles. Watch this ABC News video simulation broadcast yesterday:
    (05/03/10).
  • The cleanup onshore will rest on the shoulders of volunteers in no small ways. A swift response is going to depend on immediate reporting of contamination. The Louisiana Bucket Brigade provides a promising tool. We need to be able to act early, if wish to fight the Black Tide (05/05/10).
  • Today, Congress held a hearing with the CEOs of British Petroleum America Plc, Transocean Ltd and Halliburton & Co, the three companies involved in the Deepwater Horizon Gulf drilling project, on the events that led up to accident. BP owns the well and oversaw the project. Transocean owned the rig and ran the drilling operation. Halliburton carried out the concrete work. The hearing revealed unusual procedures during the shutdown of the oil well after exploratory drilling was concluded. Siobhan Hughes and Corey Boles report on the hearing in their Wall Street Journal post entitled "Oil-Spill Hearing Leads to Finger-Pointing" with great detail. Some commenters compared the accident in the Gulf with the Chernobyl nuclear reactor accident in 1986. Like Chernobyl, the oil spill in the Gulf appears to be the result of the erroneous belief that Man's role on Earth is to rule nature. Since we are so sure of ourselves, we do not need to check the consequences of our actions. The plant managers at Chernobyl were testing a new shutdown procedure, believing that they understood the processes going on in the reactor. The BP managers on the rig believed they could replace the liquid in the riser before the insertion of the concrete plug that is customarily used to shut off the well until production. In both incidents, the assumptions of the operators were wrong with disastrous results. In this respect, sovietmensch and capitalist do not seem to differ much. However, here the similarities end. The Chernobyl catastrophe had consequences this oil spill will never have. I have written about the incident in my post "No Country for Shrinking Violets" dated Jul. 18, 2009. In today's hearing, the CEOs were blaming each others' companies. It seems to me that the BP managers are to be held responsible, because they set the agenda for the well shutdown. Let us hope that at least the spill will be addressed with the necessary leadership and resolve in best coordination between government and enterprise (05/11/10).
  • Yesterday, BP released submersible-recorded footage of the oil spilling from the well on the sea floor. The tiny url links to the video below (05/12/10):
  • According to Richard Harris' report on NPR News today with the title "Gulf Spill Could Be Much Worse Than Believed", scientists estimate based on BP's video of the spill that the well releases between 56,000 and 70,000 barrels of oil a day, that is 15 times more than first believed (05/13/10).
  • The fateful events on the rig on the day of the blowout have become somewhat more transparent. According to Russel Gold's post today for The Wall Street Journal entitled "Crew Argued Over Drilling Plan Before Rig Explosion", BP and Transocean managers disagreed on the plans for the well shutdown. Now we need to know which party insisted on replacing the drill mud in the riser with water despite tests indicating that gas was possibly forming, and why BP consented to go ahead with the replacement, resulting in the blowout. Because the BP had to approve how to proceed with the shutdown, the company will be held responsible for this incident. Regardless who ultimately is to blame, it seems appropriate that the rig managers in charge of that day's fateful decisions step forward and apologize for their failure to the families of the crew who lost their lives (05/15/10).
  • Douglas A. Blackmon, Vanessa O'Connell, Alexandra Berzon and Ana Campoy provide the first detailed description of the events on the Deepwater Horizon immediately after the well blew out in their report for The Wall Street Journal with the title "There Was 'Nobody in Charge'" posted May 27, 2010. The report illustrates that nobody on the rig anticipated that a blowout was imminent. Rig and crew were ill-prepared to tackle a catastrophe of such incomprehensible dimension (05/29/10).
  • It is day 42 after the blowout, and the oil is still spilling into the Gulf of Mexico unabatedly. I find BP's live feed of the oil and gas spewing into the sea depressing to watch. To watch the relentless gusher on an Apple computer running Snow Leopard (OS X 10.6.3), I had to use Safari with Microsoft's Windows Media® Components for QuickTime. The plug-in is available at the Microsoft Download Center for free. I could not make it work with other browsers (05/31/10).
  • Robert Lee Holz reports in his post for The Wall Street Journal today with the title "Model Suggests Slick Could Zoom Up East Coast" on simulations carried out on national laboratory supercomputers, demonstrating that the Gulf Stream may soon pick up dispersed oil from the spill, carrying it up the East Coast at 100 miles per day. If the simulation comes true, the consequences of the Deepwater Horizon incident will become ever more costly. At present oil is still gushing from the well. Watch the simulation in this Wall Street Journal newscast below (06/03/10):
  • Eventually, BP has succeeded in installing a new riser pipe on the gusher. The amount of oil captured is unclear, but may constitute half or more of the amount released. According to Stephen Wisnewski and Nicholas Winning's report for the Wall Street Journal today with the title "BP: Cap Collects 10,000 Barrels at Well", reducing the oil flow further may take another week. Meanwhile brown tar balls are washing up on the beach of Pensacola, Florida (06/06/10).
  • According to CNN's update today entitled "Day 52: Latest oil disaster development", revised government estimates peg the gusher's release between 20,000 and 40,000 barrels of oil per day before the well was capped last week. In the four days since BP began pumping oil to the surface through the newly installed cap, the company managed to capture 73,300 barrels which corresponds to the low revised estimate of daily release (06/10/10).
  • Government scientists have again revised their estimate of the rate of oil released into the Gulf of Mexico upward to 35,000 - 60,000 barrels a day (Stephen Power, John Kell and Siobhan Hughes, "BP, Oil Industry Take Fire at Hearing", The Wall Street Journal, 06/16/2010).
  • Day 61: Today tar balls came ashore on Panama City Beach. Cleanup crews are being deployed. Check the beach cams (06/19/2010)!
  • Today, almost three months after the well blew out, BP succeeded in completely stopping the release of oil into the Gulf of Mexico. Watch the video of this historic moment below (07/15/10):
  • Today, 107 days after the blow out, the well has been plugged with concrete (see Guy Chazan's report dated Aug. 6, 2010, on The Wall Street Journal online with the title "Cementing of Well Completed"). An estimated 5,000,000 barrels of oil have gushed into the Gulf of Mexico. According to The Economist's chart with the title "Trouble on oiled waters" published online Jul. 20, 2010, the accidental spill may be largest of its kind (08/05/2010).
  • Neil King Jr. and Keith Johnson provide an in-depth background article in The Wall Street Journal entitled "An Oil-Thirsty America Barreled Into 'Dead Sea'" on the evolution of U.S. oil production policies that led up to the Deepwater Horizon disaster. The article was published online yesterday (10/08/10).
References
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